Transcript: CA3-AS1:19

Basic information

LNCipedia transcript ID: CA3-AS1:19 
LNCipedia gene ID: CA3-AS1
RefSeq ID: NR_121632
Location (hg19): chr8:86354035-86375283
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 621 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121632.1
Alternative gene names: CA3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 183.355 coding 
CPAT coding probability 3.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CA3-AS1:19 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 CA3-AS1:19
5.1 CA3-AS1:19
5.2 CA3-AS1:19