Transcript: CACNA1C-AS4:2

Basic information

LNCipedia transcript ID: CACNA1C-AS4:2 
HGNC Gene Symbol: CACNA1C-AS4    
HGNC Full Gene Name: CACNA1C antisense RNA 4
Ensembl Gene ID: ENSG00000256025
Ensembl Transcript ID: ENST00000544415
Location (hg19): chr12:2329703-2332645
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 735 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544415.1; CACNA1C-AS4-001; OTTHUMT00000398343.1
Alternative gene names: ENSG00000256025.1; CACNA1C-AS4; OTTHUMG00000168136.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.7571 non-coding 
CPAT coding probability 14.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CACNA1C-AS4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCP1B-2:1
4.0 CACNA1C-AS4:2
4.1 CACNA1C-AS4:2
5.0 CACNA1C-AS4:2
5.1 CACNA1C-AS4:2
5.2 CACNA1C-AS4:2