Transcript: CACNA1C-IT3:2

Basic information

LNCipedia transcript ID: CACNA1C-IT3:2 
LNCipedia gene ID: CACNA1C-IT3
RefSeq ID: NR_046769
Location (hg19): chr12:2378942-2397911
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 430 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046769; NR_046769.1
Alternative gene names: ; CACNA1C-IT3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.0211 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CACNA1C-IT3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRTM2-4:2
4.0 CACNA1C-IT3:2
4.1 CACNA1C-IT3:2
5.0 CACNA1C-IT3:2
5.1 CACNA1C-IT3:2
5.2 CACNA1C-IT3:2