Transcript: CADM3-AS1:3

Basic information

LNCipedia transcript ID: CADM3-AS1:3 
LNCipedia gene ID: CADM3-AS1
Location (hg19): chr1:159165775-159172302
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3384 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT006999; ENST00000415675.2
Alternative gene names: ENSG00000225670.3; CTA-134P22.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 98.5248 coding 
CPAT coding probability 67.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CADM3-AS1:3 no no no no

Available literature

  1. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AIM2-1:4
4.0 CADM3-AS1:3
4.1 CADM3-AS1:3
5.0 CADM3-AS1:3
5.1 CADM3-AS1:3
5.2 CADM3-AS1:3