Transcript: CADM3-AS1:5

Basic information

LNCipedia transcript ID: CADM3-AS1:5 
LNCipedia gene ID: CADM3-AS1
RefSeq ID: NR_037870
Location (hg19): chr1:159165775-159172212
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3294 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_037870; NR_037870.1
Alternative gene names: CTA-134P22.2; CADM3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 98.5248 coding 
CPAT coding probability 67.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CADM3-AS1:5 no no no no

Available literature

  1. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AIM2-1:5
4.0 CADM3-AS1:5
4.1 CADM3-AS1:5
5.0 CADM3-AS1:5
5.1 CADM3-AS1:5
5.2 CADM3-AS1:5