Transcript: CADM3-AS1:6

Basic information

LNCipedia transcript ID: CADM3-AS1:6 
LNCipedia gene ID: CADM3-AS1
Location (hg19): chr1:159165775-159172177
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3259 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000415675.1; CTA-134P22.2-001; OTTHUMT00000090334.1
Alternative gene names: ENSG00000225670.1; CTA-134P22.2; OTTHUMG00000037178.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 98.5248 coding 
CPAT coding probability 69.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CADM3-AS1:6 no no no no

Available literature

  1. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AIM2-1:1
4.0 CADM3-AS1:6
4.1 CADM3-AS1:6
5.0 CADM3-AS1:6
5.1 CADM3-AS1:6
5.2 CADM3-AS1:6