Transcript: CADM3-AS1:7

Basic information

LNCipedia transcript ID: CADM3-AS1:7 
LNCipedia gene ID: CADM3-AS1
Location (hg19): chr1:159168153-159170794
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT007000
Alternative gene names: CTA-134P22.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.5256 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CADM3-AS1:7 no no no no

Available literature

  1. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AIM2-1:6
4.0 CADM3-AS1:7
4.1 CADM3-AS1:7
5.0 CADM3-AS1:7
5.1 CADM3-AS1:7
5.2 CADM3-AS1:7