Transcript: CAHM:2

Basic information

LNCipedia transcript ID: CAHM:2 
LNCipedia gene ID: CAHM
RefSeq ID: NR_037593
Location (hg19): chr6:163834097-163834982
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 886 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_037593; NR_037593.1
Alternative gene names: LINC00468; CAHM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.7493 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAHM:2 no no no no

Available literature

  1. Pedersen (2014), CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia., Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-15:2
4.0 CAHM:2
4.1 CAHM:2
5.0 CAHM:2
5.1 CAHM:2
5.2 CAHM:2