Transcript: CALML3-AS1:14

Basic information

LNCipedia transcript ID: CALML3-AS1:14 
LNCipedia gene ID: CALML3-AS1
Ensembl Gene ID: ENSG00000256462
Ensembl Transcript ID: ENST00000442008
Location (hg19): chr10:5566939-5567705
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 595 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442008.2; RP11-116G8.5-001; OTTHUMT00000398079.1; NONHSAT011158
Alternative gene names: ENSG00000256462.1; RP11-116G8.5; OTTHUMG00000168091.1; ; AL732437.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 97.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CALML3-AS1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALML5-1:1
4.0 lnc-CALML5-1:1
4.1 CALML3-AS1:14
5.0 CALML3-AS1:14
5.1 CALML3-AS1:14
5.2 CALML3-AS1:14