Transcript: CALML3-AS1:4

Basic information

LNCipedia transcript ID: CALML3-AS1:4 
HGNC Gene Symbol: CALML3-AS1    
HGNC Full Gene Name: CALML3 antisense RNA 1
Ensembl Gene ID: ENSG00000205488
Ensembl Transcript ID: ENST00000545372
Location (hg19): chr10:5559332-5568204
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545372.1; RP11-116G8.4-003; OTTHUMT00000398078.1; NONHSAT011157
Alternative gene names: ENSG00000205488.3; RP11-116G8.4; OTTHUMG00000168090.1; ENSG00000205488.4; CALML3-AS1; ENSG00000205488.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.4926 non-coding 
CPAT coding probability 39.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CALML3-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALML5-2:2
4.0 CALML3-AS1:4
4.1 CALML3-AS1:4
5.0 CALML3-AS1:4
5.1 CALML3-AS1:4
5.2 CALML3-AS1:4