Transcript: CALML3-AS1:7

Basic information

LNCipedia transcript ID: CALML3-AS1:7 
HGNC Gene Symbol: CALML3-AS1    
HGNC Full Gene Name: CALML3 antisense RNA 1
Ensembl Gene ID: ENSG00000205488
Ensembl Transcript ID: ENST00000543008
Location (hg19): chr10:5556207-5565140
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 4531 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543008.1; RP11-116G8.4-001; OTTHUMT00000398076.1; NONHSAT011155
Alternative gene names: ENSG00000205488.3; RP11-116G8.4; OTTHUMG00000168090.1; ENSG00000205488.4; CALML3-AS1; ENSG00000205488.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.0944 non-coding 
CPAT coding probability 16.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CALML3-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALML5-2:4
4.0 CALML3-AS1:7
4.1 CALML3-AS1:7
5.0 CALML3-AS1:7
5.1 CALML3-AS1:7
5.2 CALML3-AS1:7