Transcript: CAMTA1-DT:10

Basic information

LNCipedia transcript ID: CAMTA1-DT:10 
HGNC Gene Symbol: CAMTA1-DT    
HGNC Full Gene Name: CAMTA1 divergent transcript
Ensembl Gene ID: ENSG00000237436
Ensembl Transcript ID: ENST00000442889
Location (hg19): chr1:6843952-6844903
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 415 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000466; ENST00000442889.1; RP11-312B8.1-001; OTTHUMT00000003603.1; NONHSAT000684
Alternative gene names: XLOC_000691; linc-DNAJC11-4; ENSG00000237436.1; RP11-312B8.1; OTTHUMG00000001213.1; AL590128.2; CAMTA1-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAMTA1-DT:10 no no no no

Available literature

  1. Ding (2016), Long Noncoding RNA lncCAMTA1 Promotes Proliferation and Cancer Stem Cell-Like Properties of Liver Cancer by Inhibiting CAMTA1., Int J Mol Sci


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJC11-1:1
3.1 lnc-DNAJC11-1:1
4.0 lnc-DNAJC11-1:1
4.1 lnc-DNAJC11-1:1
5.0 lnc-DNAJC11-1:1
5.1 CAMTA1-DT:5
5.2 CAMTA1-DT:10