Transcript: CASC11:4

Basic information

LNCipedia transcript ID: CASC11:4 
HGNC Gene Symbol: CASC11    
HGNC Full Gene Name: cancer susceptibility 11
Ensembl Gene ID: ENSG00000249375
Ensembl Transcript ID: ENST00000502463
Location (hg19): chr8:128698588-128746213
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3301 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT129039; ENST00000502463.3; ENST00000502463.7
Alternative gene names: ENSG00000249375.3; CASC11; ENSG00000249375.7; TCONS_00014535; LINC00990; CARLo-7; ENST00000518376


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8322 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC11:4 no no no no

Available literature

  1. Yin (2017), Identification of long noncoding RNA expression profile in oxaliplatin-resistant hepatocellular carcinoma cells., Gene
  2. Kim (2014), Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM75-1:5
4.0 CASC11:4
4.1 CASC11:4
5.0 CASC11:4
5.1 CASC11:4
5.2 CASC11:4