Transcript: CASC16:6

Basic information

LNCipedia transcript ID: CASC16:6 
HGNC Gene Symbol: CASC16    
HGNC Full Gene Name: cancer susceptibility 16
Ensembl Gene ID: ENSG00000249231
Ensembl Transcript ID: ENST00000510238
Location (hg19): chr16:52586005-52640847
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 955 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510238.3; RP11-297L17.1-001; OTTHUMT00000422537.2; ENST00000510238.7
Alternative gene names: ENSG00000249231.3; RP11-297L17.1; OTTHUMG00000173223.2; CASC16; ENSG00000249231.7; LOC643714


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.008 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC16:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOX3-1:6
4.0 CASC16:6
4.1 CASC16:6
5.0 CASC16:6
5.1 CASC16:6
5.2 CASC16:6