Transcript: CASC22:17

Basic information

LNCipedia transcript ID: CASC22:17 
LNCipedia gene ID: CASC22
Location (hg19): chr16:52305431-52314661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3167 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT142514; FPKM1_group_11645_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0159 non-coding 
CPAT coding probability 10.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC22:17 no no no no

Available literature

  1. Li (2014), A polymorphism rs12325489C>T in the lincRNA-ENST00000515084 exon was found to modulate breast cancer risk via GWAS-based association analyses., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD9-5:11
4.0 lnc-CHD9-5:11
4.1 lnc-CHD9-5:11
5.0 lnc-CHD9-5:11
5.1 CASC22:3
5.2 CASC22:17