Transcript: CASC22:18

Basic information

LNCipedia transcript ID: CASC22:18 
LNCipedia gene ID: CASC22
Location (hg19): chr16:52305432-52307995
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 888 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024412; NONHSAT142517
Alternative gene names: XLOC_011724; linc-CHD9-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.8962 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC22:18 no no no no

Available literature

  1. Li (2014), A polymorphism rs12325489C>T in the lincRNA-ENST00000515084 exon was found to modulate breast cancer risk via GWAS-based association analyses., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD9-4:1
3.1 lnc-CHD9-5:2
4.0 lnc-CHD9-5:2
4.1 lnc-CHD9-5:2
5.0 lnc-CHD9-5:2
5.1 CASC22:4
5.2 CASC22:18