Transcript: CASC9:4

Basic information

LNCipedia transcript ID: CASC9:4 
HGNC Gene Symbol: CASC9    
HGNC Full Gene Name: cancer susceptibility 9
Ensembl Gene ID: ENSG00000249395
Ensembl Transcript ID: ENST00000523313
Location (hg19): chr8:76136133-76236551
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523313; ENST00000523313.1; RP11-697M17.1-004; OTTHUMT00000379176.1
Alternative gene names: ENSG00000249395; RP11-697M17.1; ENSG00000249395.2; OTTHUMG00000164547.1; CASC9; LINC00981; ESCCAL-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.4174 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC9:4 no no no no

Available literature

  1. Wu (2017), Up-regulation of lncRNA CASC9 promotes esophageal squamous cell carcinoma growth by negatively regulating PDCD4 expression through EZH2., Mol. Cancer
  2. Hao (2015), Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma., BMC Cancer
  3. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JPH1-4:2
3.1 lnc-JPH1-7:2
4.0 CASC9:4
4.1 CASC9:4
5.0 CASC9:4
5.1 CASC9:4
5.2 CASC9:4