Transcript: CASC9:5

Basic information

LNCipedia transcript ID: CASC9:5 
LNCipedia gene ID: CASC9
RefSeq ID: NR_103849
Location (hg19): chr8:76135352-76191124
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1419 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103849; NR_103849.2
Alternative gene names: LINC00981; ESCCAL-1; CASC9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -50.9131 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC9:5 no no no no

Available literature

  1. Wu (2017), Up-regulation of lncRNA CASC9 promotes esophageal squamous cell carcinoma growth by negatively regulating PDCD4 expression through EZH2., Mol. Cancer
  2. Hao (2015), Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma., BMC Cancer
  3. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JPH1-7:10
4.0 CASC9:5
4.1 CASC9:5
5.0 CASC9:5
5.1 CASC9:5
5.2 CASC9:5