Transcript: CASC9:9

Basic information

LNCipedia transcript ID: CASC9:9 
LNCipedia gene ID: CASC9
Location (hg19): chr8:76135661-76190696
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1142 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00014521
Alternative gene names: XLOC_007123; linc-JPH1-6; LINC00981; ESCCAL-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.5654 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC9:9 no no no no

Available literature

  1. Wu (2017), Up-regulation of lncRNA CASC9 promotes esophageal squamous cell carcinoma growth by negatively regulating PDCD4 expression through EZH2., Mol. Cancer
  2. Hao (2015), Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma., BMC Cancer
  3. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JPH1-4:4
3.1 lnc-JPH1-7:5
4.0 CASC9:9
4.1 CASC9:9
5.0 CASC9:9
5.1 CASC9:9
5.2 CASC9:9