Transcript: CATIP-AS2:2

Basic information

LNCipedia transcript ID: CATIP-AS2:2 
LNCipedia gene ID: CATIP-AS2
RefSeq ID: NR_125777
Location (hg19): chr2:219190964-219222689
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1183 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125777; NR_125777.1
Alternative gene names: ; CATIP-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -167.7181 non-coding 
CPAT coding probability 16.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CATIP-AS2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMBIM1-1:2
4.0 CATIP-AS2:2
4.1 CATIP-AS2:2
5.0 CATIP-AS2:2
5.1 CATIP-AS2:2
5.2 CATIP-AS2:2