Transcript: CCDC144NL-AS1:21

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:21 
HGNC Gene Symbol: CCDC144NL-AS1    
HGNC Full Gene Name: CCDC144NL antisense RNA 1
Ensembl Gene ID: ENSG00000233098
Ensembl Transcript ID: ENST00000437829
Location (hg19): chr17:20852552-20883065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 837 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437829.5
Alternative gene names: ENSG00000233098.8; CCDC144NL-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.0439 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:21 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CCDC144NL-AS1:21
4.1 CCDC144NL-AS1:21
5.0 CCDC144NL-AS1:21
5.1 CCDC144NL-AS1:21
5.2 CCDC144NL-AS1:21