Transcript: CCDC18-AS1:10

Basic information

LNCipedia transcript ID: CCDC18-AS1:10 
LNCipedia gene ID: CCDC18-AS1
RefSeq ID: NR_034089
Location (hg19): chr1:93775666-93811368
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 4033 bp
Exons: 9
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000020; NONHSAT004512; NR_034089; NR_034089.1
Alternative gene names: XLOC_000918; linc-TMED5; ENST00000440778.1; CCDC18-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4184 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:10 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMED5-1:4
3.1 lnc-TMED5-1:7
4.0 CCDC18-AS1:10
4.1 CCDC18-AS1:10
5.0 CCDC18-AS1:10
5.1 CCDC18-AS1:10
5.2 CCDC18-AS1:10