Transcript: CCDC18-AS1:34

Basic information

LNCipedia transcript ID: CCDC18-AS1:34 
LNCipedia gene ID: CCDC18-AS1
Location (hg19): chr1:93730202-93792474
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000446528.1; RP4-717I23.3-010; OTTHUMT00000029568.1; NONHSAT004497
Alternative gene names: ENSG00000223745.1; RP4-717I23.3; OTTHUMG00000010705.3; ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -270.6834 non-coding 
CPAT coding probability 7.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:34 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMED5-1:23
4.0 CCDC18-AS1:34
4.1 CCDC18-AS1:34
5.0 CCDC18-AS1:34
5.1 CCDC18-AS1:34
5.2 CCDC18-AS1:34