Transcript: CCDC18-AS1:38

Basic information

LNCipedia transcript ID: CCDC18-AS1:38 
LNCipedia gene ID: CCDC18-AS1
Location (hg19): chr1:93730233-93790207
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 262 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000424517.1; RP4-717I23.3-019; OTTHUMT00000029966.1; NONHSAT004504
Alternative gene names: ENSG00000223745.1; RP4-717I23.3; OTTHUMG00000010705.3; ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -519.3663 non-coding 
CPAT coding probability 16.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:38 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMED5-1:25
4.0 CCDC18-AS1:38
4.1 CCDC18-AS1:38
5.0 CCDC18-AS1:38
5.1 CCDC18-AS1:38
5.2 CCDC18-AS1:38