Transcript: CCDC18-AS1:69

Basic information

LNCipedia transcript ID: CCDC18-AS1:69 
LNCipedia gene ID: CCDC18-AS1
Location (hg19): chr1:93775915-93803245
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 790 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223745.3|FTMT20100063972.1
Alternative gene names: ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.2851 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:69 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CCDC18-AS1:69
5.0 CCDC18-AS1:69
5.1 CCDC18-AS1:69
5.2 CCDC18-AS1:69