Transcript: CD27-AS1:21

Basic information

LNCipedia transcript ID: CD27-AS1:21 
HGNC Gene Symbol: CD27-AS1    
HGNC Full Gene Name: CD27 antisense RNA 1
Ensembl Gene ID: ENSG00000215039
Ensembl Transcript ID: ENST00000417058
Location (hg19): chr12:6548331-6556939
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1497 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417058.6
Alternative gene names: ENSG00000215039.6; CD27-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.021 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CD27-AS1:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CD27-AS1:21
4.1 CD27-AS1:21
5.0 CD27-AS1:21
5.1 CD27-AS1:21
5.2 CD27-AS1:21