Transcript: CD27-AS1:23

Basic information

LNCipedia transcript ID: CD27-AS1:23 
LNCipedia gene ID: CD27-AS1
Location (hg19): chr12:6548345-6550554
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT026075
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.021 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CD27-AS1:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAMP1-1:22
4.0 CD27-AS1:23
4.1 CD27-AS1:23
5.0 CD27-AS1:23
5.1 CD27-AS1:23
5.2 CD27-AS1:23