Transcript: CDH18-AS1:5

Basic information

LNCipedia transcript ID: CDH18-AS1:5 
HGNC Gene Symbol: CDH18-AS1    
HGNC Full Gene Name: CDH18 antisense RNA 1
Ensembl Gene ID: ENSG00000249854
Ensembl Transcript ID: ENST00000513573
Location (hg19): chr5:20305674-20331565
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 424 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513573; ENST00000513573.1; RP11-420O16.1-001; OTTHUMT00000366743.1
Alternative gene names: ENSG00000249854; RP11-420O16.1; ENSG00000249854.1; OTTHUMG00000162015.1; CDH18-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.4367 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDH18-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-7:1
3.1 lnc-BASP1-8:1
4.0 lnc-BASP1-8:1
4.1 lnc-BASP1-8:1
5.0 lnc-BASP1-8:1
5.1 CDH18-AS1:3
5.2 CDH18-AS1:5