Transcript: CDRT7:1

Basic information

LNCipedia transcript ID: CDRT7:1 
LNCipedia gene ID: CDRT7
Location (hg19): chr17:14934292-14935273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 766 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00025101
Alternative gene names: XLOC_012121; linc-ZNF286A-2; NCRNA00025; LINC00025


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.1566 non-coding 
CPAT coding probability 5.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDRT7:1 no no no no

Available literature

  1. Inoue (2001), The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF286A-2:1
3.1 lnc-ZNF286A-5:2
4.0 CDRT7:1
4.1 CDRT7:1
5.0 CDRT7:1
5.1 CDRT7:1
5.2 CDRT7:1