Transcript: CDRT7:2

Basic information

LNCipedia transcript ID: CDRT7:2 
HGNC Gene Symbol: CDRT7    
HGNC Full Gene Name: CMT1A duplicated region transcript 7
Ensembl Gene ID: ENSG00000259944
Ensembl Transcript ID: ENST00000568256
RefSeq ID: NR_033371
Location (hg19): chr17:14934292-14935274
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 767 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000568256.1; CDRT7-001; OTTHUMT00000130381.1; NONHSAT145786; NR_033371; NR_033371.1
Alternative gene names: ENSG00000259944.1; CDRT7; OTTHUMG00000058961.1; NCRNA00025; LINC00025


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.1566 non-coding 
CPAT coding probability 5.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDRT7:2 no no no no

Available literature

  1. Inoue (2001), The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF286A-5:1
4.0 CDRT7:2
4.1 CDRT7:2
5.0 CDRT7:2
5.1 CDRT7:2
5.2 CDRT7:2