Transcript: CERNA2:4

Basic information

LNCipedia transcript ID: CERNA2:4 
HGNC Gene Symbol: CERNA2    
HGNC Full Gene Name: competing endogenous lncRNA 2 for microRNA let-7b
RefSeq ID: NR_134505
Location (hg19): chr10:85926984-85931832
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1857 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134505.1
Alternative gene names: HOST2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 51.8273 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CERNA2:4 no no no no

Available literature

  1. Liu (2017), Effects of LncRNA-HOST2 on cell proliferation, migration, invasion and apoptosis of human hepatocellular carcinoma cell line SMMC-7721., Biosci. Rep.
  2. Gao (2015), LncRNA-HOST2 regulates cell biological behaviors in epithelial ovarian cancer through a mechanism involving microRNA let-7b., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 CERNA2:4
5.1 CERNA2:4
5.2 CERNA2:4