Transcript: CERNA3:3

Basic information

LNCipedia transcript ID: CERNA3:3 
HGNC Gene Symbol: CERNA3    
HGNC Full Gene Name: competing endogenous lncRNA 3 for miR-645
Ensembl Gene ID: ENSG00000253603
Ensembl Transcript ID: ENST00000521403
Location (hg19): chr8:56987151-56987833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521403.1; CTA-397H3.3-001; OTTHUMT00000378173.1; NONHSAT126683
Alternative gene names: ENSG00000253603.1; CTA-397H3.3; OTTHUMG00000164298.1; CERNA3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.154 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CERNA3:3 no no no no

Available literature

  1. Wang (2017), Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYN-1:1
4.0 lnc-LYN-1:1
4.1 lnc-LYN-1:1
5.0 lnc-LYN-1:1
5.1 CERNA3:2
5.2 CERNA3:3