Transcript: CFAP58-DT:10

Basic information

LNCipedia transcript ID: CFAP58-DT:10 
LNCipedia gene ID: CFAP58-DT
Location (hg19): chr10:106109963-106113329
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3367 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231233.1|ENCT00000059657.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.9349 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFAP58-DT:10 no no no no

Available literature

  1. Xie (2018), LncITPRIP-1 Positively Regulates Innate Immune Response through Promoting Oligomerization and Activation of MDA5., J. Virol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CFAP58-AS1:4
5.0 CFAP58-AS1:4
5.1 CFAP58-DT:5
5.2 CFAP58-DT:10