Transcript: CHL1-AS1:2

Basic information

LNCipedia transcript ID: CHL1-AS1:2 
LNCipedia gene ID: CHL1-AS1
RefSeq ID: NR_110739
Location (hg19): chr3:405056-427478
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 910 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110739; NR_110739.1
Alternative gene names: ; CHL1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -91.6331 non-coding 
CPAT coding probability 3.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHL1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL5RA-5:3
4.0 CHL1-AS1:2
4.1 CHL1-AS1:2
5.0 CHL1-AS1:2
5.1 CHL1-AS1:2
5.2 CHL1-AS1:2