Transcript: CKMT2-AS1:1

Basic information

LNCipedia transcript ID: CKMT2-AS1:1 
LNCipedia gene ID: CKMT2-AS1
Location (hg19): chr5:80596185-80597401
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1217 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT102447
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -138.0727 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CKMT2-AS1:1 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT12-1:8
4.0 CKMT2-AS1:1
4.1 CKMT2-AS1:1
5.0 CKMT2-AS1:1
5.1 CKMT2-AS1:1
5.2 CKMT2-AS1:1