Transcript: CKMT2-AS1:11

Basic information

LNCipedia transcript ID: CKMT2-AS1:11 
HGNC Gene Symbol: CKMT2-AS1    
HGNC Full Gene Name: CKMT2 antisense RNA 1
Ensembl Gene ID: ENSG00000247572
Ensembl Transcript ID: ENST00000511495
Location (hg19): chr5:80505920-80597316
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511495.1; CTC-281B15.1-007; OTTHUMT00000369616.1; NONHSAT102435
Alternative gene names: ENSG00000247572.2; CTC-281B15.1; OTTHUMG00000162566.1; ENSG00000247572.3; CKMT2-AS1; ENSG00000247572.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -88.3634 non-coding 
CPAT coding probability 10.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CKMT2-AS1:11 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT12-1:6
4.0 CKMT2-AS1:11
4.1 CKMT2-AS1:11
5.0 CKMT2-AS1:11
5.1 CKMT2-AS1:11
5.2 CKMT2-AS1:11