Transcript: CKMT2-AS1:20

Basic information

LNCipedia transcript ID: CKMT2-AS1:20 
LNCipedia gene ID: CKMT2-AS1
Location (hg19): chr5:80534336-80597365
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1187 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247572.3|FTMT21700010545.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.561 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CKMT2-AS1:20 yes no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CKMT2-AS1:20
5.0 CKMT2-AS1:20
5.1 CKMT2-AS1:20
5.2 CKMT2-AS1:20