Transcript: CKMT2-AS1:3

Basic information

LNCipedia transcript ID: CKMT2-AS1:3 
LNCipedia gene ID: CKMT2-AS1
RefSeq ID: NR_034123
Location (hg19): chr5:80533384-80597388
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2074 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT102441; NR_034123; NR_034123.1
Alternative gene names: ; CKMT2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -39.3194 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CKMT2-AS1:3 yes no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT12-1:10
4.0 CKMT2-AS1:3
4.1 CKMT2-AS1:3
5.0 CKMT2-AS1:3
5.1 CKMT2-AS1:3
5.2 CKMT2-AS1:3