Transcript: CLIP1-AS1:4

Basic information

LNCipedia transcript ID: CLIP1-AS1:4 
HGNC Gene Symbol: CLIP1-AS1    
HGNC Full Gene Name: CLIP1 antisense RNA 1
Ensembl Gene ID: ENSG00000257097
Ensembl Transcript ID: ENST00000535976
Location (hg19): chr12:122880153-122885404
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1745 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000535976; ENST00000535976.1; RP11-450K4.1-001; OTTHUMT00000401639.1; NONHSAT031507
Alternative gene names: ENSG00000257097; RP11-450K4.1; ENSG00000257097.1; OTTHUMG00000168927.1; CLIP1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.0116 non-coding 
CPAT coding probability 14.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CLIP1-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KNTC1-1:2
3.1 lnc-KNTC1-1:2
4.0 CLIP1-AS1:4
4.1 CLIP1-AS1:4
5.0 CLIP1-AS1:4
5.1 CLIP1-AS1:4
5.2 CLIP1-AS1:4