Transcript: CLMAT3:7

Basic information

LNCipedia transcript ID: CLMAT3:7 
LNCipedia gene ID: CLMAT3
Location (hg19): chr5:151056506-151067468
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1970 bp
Exons: 5
Sources: Refseq - Dec 2014
Alternative transcript names: NR_109873
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.278 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CLMAT3:7 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Ye (2015), Aberrant expression of long noncoding RNAs in colorectal cancer with liver metastasis., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-G3BP1-2:4
4.0 lnc-G3BP1-2:4
4.1 lnc-G3BP1-2:4
5.0 lnc-G3BP1-2:4
5.1 CLMAT3:3
5.2 CLMAT3:7