Transcript: CLMAT3:8

Basic information

LNCipedia transcript ID: CLMAT3:8 
HGNC Gene Symbol: CLMAT3    
HGNC Full Gene Name: colorectal liver metastasis associated transcript 3
Ensembl Gene ID: ENSG00000249035
Ensembl Transcript ID: ENST00000518905
Location (hg19): chr5:151056534-151104343
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 410 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518905; ENST00000518905.1; CTB-113P19.1-002; OTTHUMT00000373978.1; NONHSAT104624
Alternative gene names: ENSG00000249035; CTB-113P19.1; ENSG00000249035.2; OTTHUMG00000163500.2; ENSG00000249035.6; CLMAT3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.892 non-coding 
CPAT coding probability 4.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CLMAT3:8 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Ye (2015), Aberrant expression of long noncoding RNAs in colorectal cancer with liver metastasis., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-G3BP1-1:2
3.1 lnc-G3BP1-2:2
4.0 lnc-G3BP1-2:2
4.1 lnc-G3BP1-2:2
5.0 lnc-G3BP1-2:2
5.1 CLMAT3:4
5.2 CLMAT3:8