Transcript: CNNM3-DT:15

Basic information

LNCipedia transcript ID: CNNM3-DT:15 
LNCipedia gene ID: CNNM3-DT
Location (hg19): chr2:97477562-97481889
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2189 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000049364.1|MICT00000194632.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.0599 non-coding 
CPAT coding probability 8.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNNM3-DT:15 yes no no no

Available literature

  1. Lu (2016), Increased expression of long noncoding RNAs LOC100652951 and LOC100506036 in T cells from patients with rheumatoid arthritis facilitates the inflammatory responses., Immunol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ANKRD23-2:7
5.0 lnc-ANKRD23-2:7
5.1 CNNM3-DT:5
5.2 CNNM3-DT:15