Transcript: CNNM3-DT:21

Basic information

LNCipedia transcript ID: CNNM3-DT:21 
HGNC Gene Symbol: CNNM3-DT    
HGNC Full Gene Name: CNNM3 divergent transcript
Ensembl Gene ID: ENSG00000273265
Ensembl Transcript ID: ENST00000608609
Location (hg19): chr2:97477976-97479394
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608609.1
Alternative gene names: ENSG00000273265.1; RP11-353K11.1; AC092636.1; CNNM3-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.194 non-coding 
CPAT coding probability 16.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNNM3-DT:21 no no no no

Available literature

  1. Lu (2016), Increased expression of long noncoding RNAs LOC100652951 and LOC100506036 in T cells from patients with rheumatoid arthritis facilitates the inflammatory responses., Immunol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD23-3:1
4.0 lnc-ANKRD23-3:1
4.1 lnc-ANKRD23-2:10
5.0 lnc-ANKRD23-2:10
5.1 CNNM3-DT:11
5.2 CNNM3-DT:21