Transcript: CNTFR-AS1:6

Basic information

LNCipedia transcript ID: CNTFR-AS1:6 
HGNC Gene Symbol: CNTFR-AS1    
HGNC Full Gene Name: CNTFR antisense RNA 1
Ensembl Gene ID: ENSG00000237159
Ensembl Transcript ID: ENST00000438244
Location (hg19): chr9:34568013-34582827
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 638 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438244.1; RP11-296L22.4-003; OTTHUMT00000001119.1
Alternative gene names: ENSG00000237159.1; RP11-296L22.4; OTTHUMG00000000441.1; CNTFR-AS1; ENSG00000237159.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.1924 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNTFR-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAI1-2:2
4.0 CNTFR-AS1:6
4.1 CNTFR-AS1:6
5.0 CNTFR-AS1:6
5.1 CNTFR-AS1:6
5.2 CNTFR-AS1:6