Transcript: CNTN4-AS1:2

Basic information

LNCipedia transcript ID: CNTN4-AS1:2 
LNCipedia gene ID: CNTN4-AS1
RefSeq ID: NR_046554
Location (hg19): chr3:3081345-3102829
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1012 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000442749.1; CNTN4-AS1-001; OTTHUMT00000337448.2; NR_046554; NR_046554.1
Alternative gene names: ENSG00000237990.1; CNTN4-AS1; OTTHUMG00000154875.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.4761 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNTN4-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL5RA-1:1
4.0 CNTN4-AS1:2
4.1 CNTN4-AS1:2
5.0 CNTN4-AS1:2
5.1 CNTN4-AS1:2
5.2 CNTN4-AS1:2