Transcript: CNTN4-AS1:3

Basic information

LNCipedia transcript ID: CNTN4-AS1:3 
HGNC Gene Symbol: CNTN4-AS1    
HGNC Full Gene Name: CNTN4 antisense RNA 1
Ensembl Gene ID: ENSG00000237990
Ensembl Transcript ID: ENST00000442749
Location (hg19): chr3:3080717-3102829
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1640 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT087595; ENST00000442749.2
Alternative gene names: ENSG00000237990.2; CNTN4-AS1; ENSG00000237990.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.5303 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNTN4-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL5RA-1:2
4.0 CNTN4-AS1:3
4.1 CNTN4-AS1:3
5.0 CNTN4-AS1:3
5.1 CNTN4-AS1:3
5.2 CNTN4-AS1:3