Transcript: COL18A1-AS1:2

Basic information

LNCipedia transcript ID: COL18A1-AS1:2 
HGNC Gene Symbol: COL18A1-AS1    
HGNC Full Gene Name: COL18A1 antisense RNA 1
Ensembl Gene ID: ENSG00000183535
Ensembl Transcript ID: ENST00000397787
RefSeq ID: NR_028082
Location (hg19): chr21:46839631-46844955
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3425 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000397787; ENST00000397787.1; COL18A1-AS1-002; OTTHUMT00000269033.2; NONHSAT082960; NR_028082; ENST00000397787.5; NR_028082.1
Alternative gene names: ENSG00000183535; NCRNA00175; ENSG00000183535.5; COL18A1-AS1; OTTHUMG00000090401.3; ENSG00000183535.9; PRED80


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0415 non-coding 
CPAT coding probability 69.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
COL18A1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC19A1-1:2
3.1 lnc-SLC19A1-1:2
4.0 COL18A1-AS1:2
4.1 COL18A1-AS1:2
5.0 COL18A1-AS1:2
5.1 COL18A1-AS1:2
5.2 COL18A1-AS1:2