Transcript: COX10-AS1:10

Basic information

LNCipedia transcript ID: COX10-AS1:10 
LNCipedia gene ID: COX10-AS1
Location (hg19): chr17:13659795-13796158
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000582752.1; AC015842.1-004; OTTHUMT00000441743.1; NONHSAT145729
Alternative gene names: ENSG00000236088.2; AC015842.1; OTTHUMG00000058771.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -397.4675 non-coding 
CPAT coding probability 7.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
COX10-AS1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST3A1-4:2
4.0 COX10-AS1:10
4.1 COX10-AS1:10
5.0 COX10-AS1:10
5.1 COX10-AS1:10
5.2 COX10-AS1:10