Transcript: CPEB1-AS1:3

Basic information

LNCipedia transcript ID: CPEB1-AS1:3 
LNCipedia gene ID: CPEB1-AS1
Location (hg19): chr15:83317155-83319273
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1070 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT047842
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2021 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPEB1-AS1:3 yes no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-379H8.1.1-1:3
4.0 CPEB1-AS1:3
4.1 CPEB1-AS1:3
5.0 CPEB1-AS1:3
5.1 CPEB1-AS1:3
5.2 CPEB1-AS1:3