Transcript: CPEB1-AS1:4

Basic information

LNCipedia transcript ID: CPEB1-AS1:4 
HGNC Gene Symbol: CPEB1-AS1    
HGNC Full Gene Name: CPEB1 antisense RNA 1
Ensembl Gene ID: ENSG00000259462
Ensembl Transcript ID: ENST00000618020
Location (hg19): chr15:83318780-83321773
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2994 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618020.1
Alternative gene names: ENSG00000259462.2; CPEB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.3065 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPEB1-AS1:4 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CPEB1-AS1:4
4.1 CPEB1-AS1:4
5.0 CPEB1-AS1:4
5.1 CPEB1-AS1:4
5.2 CPEB1-AS1:4